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Next-Gen Sequencing tools from the Horvath Lab

SNPlice-Combine Usage

Synopsis

Graphical User Interface:

SNPlice-Combine

Command-line:

SNPlice-Combine [options]

Description

Sum the counts from multiple SNPlice analyses (such as from distinct samples). Each of the original analyses should have used the same set of SNPs and junctions. Statistical tests and scores are recomputed for the summed (pooled) counts.

Graphical User Interface

Options

Options

Counts, -c COUNTS, –counts=COUNTS

Read count files computed by SNPlice (tabular output). Required.

Quiet, -q, –quiet

Quiet.

Output File, -o OUTPUT, –output=OUTPUT

Output file. Leave empty for console ouptut. Valid output formats include text (txt extension), tsv, csv, xlsx, and xls. Console output is in text format.

–version

show program’s version number and exit.

-h, –help

Show this help message and exit.

See Also

SNPlice Home, SNPlice, Input Files, Output Files